PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 267aa    MW: 30140.4 Da    PI: 6.2263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W++ ++  g++R++k+c++rw +yl
   XP_013586436.1 14 KGPWTAEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding51.52.4e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
   XP_013586436.1  71 SHDEEQLVIDLHAHLGNK-WSKIASRLP-GRTDNEIKNHWNTH 111
                      789***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-20562IPR009057Homeodomain-like
PROSITE profilePS5129412.615961IPR017930Myb domain
SuperFamilySSF466892.7E-2613108IPR009057Homeodomain-like
SMARTSM007176.2E-121363IPR001005SANT/Myb domain
PfamPF002497.0E-141461IPR001005SANT/Myb domain
CDDcd001675.04E-91661No hitNo description
PROSITE profilePS5129427.37162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2463117IPR009057Homeodomain-like
SMARTSM007173.8E-1466114IPR001005SANT/Myb domain
CDDcd001677.00E-1171112No hitNo description
PfamPF002491.2E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRQPCCDKL VVKKGPWTAE EDKKLINFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SHDEEQLVID LHAHLGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLVKMG  120
IDPMTHQPLN QEPNNTNNPQ SLSSTSDDIS MKPRSGSTKE TNGTLTEDES SSTVTGQNNS  180
TDNENHLLSN IYNDEELFSH LWSDETTTAE APWSDSNDGF GGTLYHHDNN MSGAGADFPI  240
WSPEGINGND WTFLDYCQDF GVHDFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27141167108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759931e-144AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds.
GenBankAK1757181e-144AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15.
GenBankAK1757771e-144AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17.
GenBankAY0854971e-144AY085497.1 Arabidopsis thaliana clone 154343 mRNA, complete sequence.
GenBankAY5196081e-144AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds.
GenBankDQ4468631e-144DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds.
GenBankDQ6532181e-144DQ653218.1 Arabidopsis thaliana clone 0000012874_0000009286 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586436.10.0PREDICTED: protein ODORANT1
RefseqXP_013740433.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-91ODO1_PETHY; Protein ODORANT1
TrEMBLA0A078D6V30.0A0A078D6V3_BRANA; BnaC01g14080D protein
TrEMBLA0A0D3A5860.0A0A0D3A586_BRAOL; Uncharacterized protein
STRINGBra013633.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-152myb domain protein 85